Caghan Kizil
Mechanisms of induced plasticity of the vertebrate brain
Dr. Caghan Kizil
Group Leader
Tatzberg 41
01307  Dresden
 +49 351 210 463-603

Areas of investigation/research focus

In our laboratory, using experimental models, we are investigating whether increased activity of neural stem cells (induced plasticity) and formation of new neurons (regenerative neurogenesis) could be a treatment option against Alzheimer’s disease.

In a neurodegenerative state of the human brain, besides the degenerating neurons, the inability of the neural stem cells to produce new neurons is a barrier to remedy. Additionally, even if the pathological culprits of neuronal degeneration were circumvented, the functional recovery does not take place due to the lack of new neurogenesis in mammalian nervous system. Thus, neurodegenerative diseases can also be considered as “stem cell diseases” (Cosacak et al., 2015; Tincer et al., 2016; Kizil, 2018). 

We have been using zebrafish as a model organism that can efficiently regenerate lost neurons. After generating neurodegeneration models in adult zebrafish brain, we found that the regeneration capacity of zebrafish brain depends on the induction of specific regeneration-associated programs that turn on the re-development programs of neurons (Bhattarai et al., 2016, 2017a, 2017b; Cosacak et al., 2017; Cosacak et al., 2019; Bhattarai et al., 2020). This understanding is important as to show that re-development of lost neural tissues require neural stem cells to induce special programs to mount a successful regenerative response.

Our research is aiming at understanding the regenerative and developmental programs of neural stem cells in zebrafish to induce a successful proliferation-differentiation-development cascade for neurons in human brains, and harnessing this knowledge for designing stem cell-based therapies to cure Alzheimer’s disease in humans.

To serve as a comparative experimental model for zebrafish, we have also generated in vitro 3D human brain culture system by using neural stem cells that lead to tissue-mimetic modeling of human neuronal development and degeneration, which  generated the first spin-off of DZNE. By using these two systems in a comparative manner, we have identified several regeneration factors that facilitate human neural development and ameliorate hampered plasticity of human neural stem cells in disease conditions (Papadimitriou et al., 2018; Celikkaya et al., 2019).

Key Publications

Bhattarai, P., Cosacak, M.I., Mashkaryan, V., Demir, S., Popova, S., Govindarajan, N., Brandt, K., Zhang, Y., Chang, W., Ampatzis, K., Kizil C. Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer’s model of adult zebrafish brain. PLoS Biol. 2020 Jan 06; 18:e3000585. doi: 10.1371/journal.pbio.3000585
Cosacak MI, Bhattarai P, Reinhardt S, Petzold A, Dahl A, Zhang Y, et al. Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity. Cell Rep. 2019 Jan 01; 27:1307-18 e3. doi: 10.1016/j.celrep.2019.03.090
Christos Papadimitriou, Hilal Celikkaya, Mehmet I. Cosacak, Violeta Mashkaryan, Laura Bray, Prabesh Bhattarai, Kerstin Brandt, Heike Hollak, Xin Chen, Shuijin He, Christopher L. Antos, Weilin Lin, Alvin Kuriakose Thomas, Andreas Dahl, Thomas Kurth, Jens Friedrichs, Yixin Zhang, Uwe Freudenberg, Carsten Werner, Caghan Kizil. 3D Culture Method for Alzheimer's Disease Modeling Reveals Interleukin-4 Rescues Aβ42-Induced Loss of Human Neural Stem Cell Plasticity. Developmental Cell. 2018 Jul 01; 46:85-101.e8. doi: 10.1016/j.devcel.2018.06.005
Kizil C, Bhattarai P. Is Alzheimer’s also a stem cell disease? – The zebrafish perspective. Front Cell Dev Biol. 2018 Jan 01; 6:159. doi: 10.3389/fcell.2018.00159
Prabesh Bhattarai, Alvin Kuriakose Thomas, Mehmet Ilyas Cosacak, Christos Papadimitriou, Violeta Mashkaryan, Cynthia Froc, Susanne Reinhardt, Thomas Kurth, Andreas Dahl, Yixin Zhang, Caghan Kizil. IL4/STAT6 Signaling Activates Neural Stem Cell Proliferation and Neurogenesis upon Amyloid-β42 Aggregation in Adult Zebrafish Brain. Cell Reports. 2016 Oct 17; 17:941-948. doi: 10.1016/j.celrep.2016.09.075


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